As proteins come in for structural prediction, we need to run protein disorder prediction along side AlphaFold. Susan runs disorder prediction using CCD, but I think we can get away with just running one disorder prediction tool, like IUPRED.
I downloaded the IUPRED code, and ran it locally using the following protein. I have verified that that the result returned by CCD is the same produced by the IUPRED command line tool.
As proteins come in for structural prediction, we need to run protein disorder prediction along side AlphaFold. Susan runs disorder prediction using CCD, but I think we can get away with just running one disorder prediction tool, like IUPRED.
I downloaded the IUPRED code, and ran it locally using the following protein. I have verified that that the result returned by CCD is the same produced by the IUPRED command line tool.