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lcalviell / Ribo-seQC

A comprehensive analysis tool for Ribo-seq and small RNA-seq data
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P_sites_bins only has 5000 genes? #4

Open Leo-ccc opened 1 year ago

Leo-ccc commented 1 year ago

Hello Calviello:

I retrieved 'P_sites_bins' from 'xxx_results_RiboseQC_all' and found that it only had 5000 transcripts, though I use the parameter ' Fast_mode = F'. For example: profiles_P_sites_28nt <- as.data.frame(res_all[["profiles_P_sites"]][["P_sites_bins"]][["nucl"]][["28"]])

I want to use all annotated protein coding genes to plot CDS metagene, please reply to me if you know the right method.

Thank you!