MultiQC - Githubissues

lcdb / lcdb-workflows

DEPRECATED. Please see https://github.com/lcdb/lcdb-wf

MIT License

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MultiQC #2

Open jfear opened 8 years ago

jfear commented 8 years ago

I have been playing a little with MultiQC. It could be used as the reporting framework.

On the plus side, it has a lot of really nice features

Interactive graphs
File discovery based on name
On the fly sample filtering

On the downside

Less control
Constrained to multiqc framework??

daler commented 8 years ago

That linked yaml is very nice. As for the downsides, even if we have less control, it doesn't have to be the entire report -- it can be linked to from within a larger report where we have more control.

daler commented 8 years ago

I found out about the -s param to multiqc -- that way it'll find, e.g., the fastqc files from raw and post-trimming and name them separately

jfear commented 8 years ago

I have been watching their repository, and I the author is very responsive. I really think we should considering making this the a large part of the reporting system.