lcdb / lcdb-workflows

DEPRECATED. Please see https://github.com/lcdb/lcdb-wf
MIT License
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Bowtie2 clean #25

Closed jfear closed 8 years ago

jfear commented 8 years ago

Here is a cleaned up version of the bowtie2 wrapper. It adds a wrapper for building a bowtie index and a wrapper for aligning. I modified things to be very similar to the hisat2 wrapper.

daler commented 8 years ago

Independent test works -- merging!