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lcdb / lcdb-workflows

DEPRECATED. Please see https://github.com/lcdb/lcdb-wf
MIT License
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Docs setup #39

Closed daler closed 8 years ago

daler commented 8 years ago

This PR builds on #38, and adds a bunch of stuff for the docs -- including docs on building the docs.

See the built docs at http://lcdb.github.io/lcdb-workflows. It currently includes DAGs and rulegraphs built for the references and mapping workflows, using the test config. In order for this to work, I had to rename references/references.snakefile to references/Snakefile.

Since it builds on #38, same testing applies for the new --cluster funtionality:

test/run_test.py workflows/mapping/Snakefile --cluster --build-env --clean

After running that, try building the docs:

bash docs/build-docs.sh
jfear commented 8 years ago

You already merged #38 into this branch, so do I just need to merge this pull request?

daler commented 8 years ago

I had branched off of #38 instead of master when working on this . . . if you merge #38 into master, I think this will update to reflect only the changes relative to the #38-merged master