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lcdb / lcdb-workflows

DEPRECATED. Please see https://github.com/lcdb/lcdb-wf
MIT License
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Updates dm6 download URL from current to FB2016_03 #42

Closed jfear closed 8 years ago

jfear commented 8 years ago

Flybase just release 6.12. In the config files the url pointed to the 'current' directory which now has 6.12 and not 6.11. Fixed url to point to 6.11.

christabone commented 8 years ago

Just an FYI - we released 2016_04 yesterday if you'd like to update (it will be current until ~September 27th).

ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.12_FB2016_04/fasta/

christabone commented 8 years ago

Ah, my mistake, I see that you're keeping it on the older version. Please ignore my other comment. :)

jfear commented 8 years ago

Haha, already figured that out, it pointed out a bug in our reference construction pipeline.

On Fri, Jul 29, 2016 at 3:30 PM, Christopher Tabone < notifications@github.com> wrote:

Just an FYI - we released 2016_04 yesterday if you'd like to update (it will be current until ~September 27th).

ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.12_FB2016_04/fasta/

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/lcdb/lcdb-workflows/pull/42#issuecomment-236272743, or mute the thread https://github.com/notifications/unsubscribe-auth/ABLtcAB1S721Z4mZSsiJJ0c8i87aZ8vCks5qalTcgaJpZM4JYdqS .

jfear commented 8 years ago

Thanks though, we like to keep version constant on a per project basis. Then when the project is complete we typically try to re-run with what ever is most current.

daler commented 8 years ago

thanks, good catch.