Closed FelixErnst closed 4 years ago
Hi,
biocthis::use_bioc_github_action() creates a GHA config files which contains the following lines:
biocthis::use_bioc_github_action()
- name: Set BiocVersion run: | BiocManager::install(version = "RELEASE_3_11", ask = FALSE) shell: Rscript {0}
This causes an error when run on GitHub and is not a valid version number as defined in ?BiocManager::install
?BiocManager::install
#> R version 4.0.2 (2020-06-22) #> Platform: x86_64-w64-mingw32/x64 (64-bit) #> Running under: Windows 10 x64 (build 19041) #> #> Matrix products: default #> #> locale: #> [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 #> [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C #> [5] LC_TIME=German_Germany.1252 #> #> attached base packages: #> [1] stats graphics grDevices utils datasets methods base #> #> other attached packages: #> [1] biocthis_0.99.1 #> #> loaded via a namespace (and not attached): #> [1] knitr_1.30 magrittr_1.5 usethis_1.6.3 rlang_0.4.8 #> [5] stringr_1.4.0 styler_1.3.2 highr_0.8 tools_4.0.2 #> [9] xfun_0.18 htmltools_0.5.0 ellipsis_0.3.1 yaml_2.2.1 #> [13] digest_0.6.26 tibble_3.0.4 lifecycle_0.2.0 crayon_1.3.4 #> [17] purrr_0.3.4 vctrs_0.3.4 fs_1.5.0 glue_1.4.2 #> [21] evaluate_0.14 rmarkdown_2.4 stringi_1.5.3 compiler_4.0.2 #> [25] pillar_1.4.6 backports_1.1.10 pkgconfig_2.0.3
Thanks for reporting this issue. This problem should be fixed now.
Hi,
biocthis::use_bioc_github_action()
creates a GHA config files which contains the following lines:This causes an error when run on GitHub and is not a valid version number as defined in
?BiocManager::install
SessionInfo