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lcolladotor / derfinder

Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
http://lcolladotor.github.io/derfinder
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Coverage matrix for regions #44

Open Prakrithi-P opened 1 year ago

Prakrithi-P commented 1 year ago

Hi , Thank you so much for the package. I'm wondering how to load .bw files and calculate coverage matrix for specified custom regions. I couldn't find this in the documentation. It would be really helpful if I could know how to do this.

Thanks and regards, Prakrithi

lcolladotor commented 1 year ago

Hi,

Thank you for your interest in derfinder. It sounds like you could use http://lcolladotor.github.io/derfinder/reference/getRegionCoverage.html with files specified and fullCov = NULL.

Best, Leo