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lczech / gappa

A toolkit for analyzing and visualizing phylogenetic (placement) data
GNU General Public License v3.0
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Error: In proximity(): close exceeds distant #30

Closed johnne closed 6 months ago

johnne commented 6 months ago

gappa version: 0.7.1

Hi, I'm getting an error when using gappa examine assign. The command ran for about 7 minutes before throwing the error:

Error: In proximity(): close exceeds distant

terminate called after throwing an instance of 'std::invalid_argument'
  what():  In proximity(): close exceeds distant

I tried on a smaller dataset (this one that failed has 559023 query sequences) and it seemed to work.

Attaching the full log and input files. taxonomy.tsv.gz gappa_assign.MAD.log epa_result.jplace.gz

johnne commented 6 months ago

This error disappeared after upgrading to version 0.8.4.

lczech commented 6 months ago

Haha good to know, thanks for the feedback, and please excuse that I did not reply earlier! I would have suggested to test with the latest version ;-)