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lczech
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grenedalf
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
GNU General Public License v3.0
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filter-sample-max-read-depth options
#36
ribeirots
opened
1 month ago
3
G statistic request
#35
plunkert
opened
1 month ago
2
Columns in output file don't add up
#34
Easybel
opened
1 month ago
1
Sub-pooling suggestions
#33
alexis-sedg
opened
1 month ago
3
Possible Issue with FST Subcommand in Versions Above v0.5
#32
VitoriaHorvathMiranda
closed
2 months ago
6
fst-cathedral : Segmentation Fault
#31
plhm
closed
1 month ago
10
About pool sequencing population genetic data
#30
Song-10-YF
opened
2 months ago
2
masking: The current position of the input Variant is greater than the length of the chromosome as specified by the SequenceDict
#29
zajacn
closed
2 months ago
5
v0.5.2 versioning typo
#28
vilperte
closed
4 months ago
3
--sam-min-map-qual and depth
#27
pashapu43
closed
4 months ago
9
Grendalf not outputting when sites are missing in the Mpileup file
#26
sholtz1
closed
3 months ago
2
Masking sample-wise
#25
capoony
closed
3 months ago
2
masking when averaging by window-length
#24
capoony
opened
4 months ago
3
Error: Svg axis label position out of [ 0.0, 1.0 ]
#23
peterdfields
closed
5 months ago
8
error with grenedalf
#22
ospfsg
closed
5 months ago
3
Multiallelic positions handling not available in v0.5.0
#21
vilperte
closed
5 months ago
7
Unidentifed issues when creating sync file
#20
tiphaine-b
closed
7 months ago
6
Compilation problem during NIX packaging
#19
bzizou
closed
6 months ago
23
Sample grouping for diversity calculation
#18
vilperte
closed
8 months ago
16
diversity calculations (pi) seem to calculate based on windows in an unexpected way
#17
TylerAudet
closed
5 months ago
2
subsampling vs coverage thresholds
#16
r-mashoodh
closed
5 months ago
14
BAMs vs VCFs for pooled mitochondrial variants using Kofler or Karlsson
#15
MarinaSci
closed
5 months ago
4
How to understand the statistics of the screen output？
#14
biozzq
closed
5 months ago
2
compilation warning with gcc/12.3.0
#13
douglasgscofield
closed
1 year ago
1
Problem compilation
#12
davidcb98
closed
1 year ago
9
install errors
#11
biozzq
closed
1 year ago
10
Question: How does the SNP window work?
#10
SheepwormJM
closed
5 months ago
7
Diversity by chromosomes output file - tiny issue?
#9
SheepwormJM
closed
1 year ago
4
error regarding vcf file from PoolSNP
#8
JennyCNS
closed
5 months ago
4
Dxy calcuations
#7
bioinfowheat
closed
5 months ago
2
Unordered chromosomes error
#6
jkreinz
closed
1 year ago
2
Suggestion: Include MASK files for correct calculation of per-site averages
#5
capoony
closed
5 months ago
4
Suggestion to include "missing data" codes
#4
capoony
closed
1 year ago
12
Inconsistencies between `--sample-name-list` and `--filter-samples-exclude`
#3
capoony
closed
1 year ago
3
output extension is csv, but actually "\t"
#2
rsbrennan
closed
1 year ago
4
Open MP issue
#1
LennWhy
closed
1 year ago
15