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ldecicco-USGS / toxManuscript

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Manuscript figures #31

Closed srcorsi-USGS closed 5 years ago

srcorsi-USGS commented 6 years ago

Here, I am keeping a general list of the manuscript figs for our reference. If needed, there will be separate figure-specific issues for details.

  1. EAR vs benchmark 4-panel fig
  2. Chemical counts for site prioritization
  3. Boxplots of EARs by toxcast endpoint with endpoints with AOPs highlighted
  4. 2-panel: X-axis = AOP for A. boxplots with EAR, and B. heat map with endpoint
  5. AOP networks
ldecicco-USGS commented 6 years ago

This seems to work:

# Create all the figures....

# Fig 1:
source("fig1_combo_graph.R")
rm(list=ls())
# Fig 2:
source("fig_2_site_counts.R")
rm(list=ls())
# Fig 3:
source("fig_3_endpoint_boxplots.R")
rm(list=ls())
# Fig 4:
source("fig_4_aop_priority.R", print.eval=TRUE)
rm(list=ls())

(it's the create_all_figs.R script). I'm updating the scripts to toxEval 1.0.0 and ggplot2 3.0.0 notation. I'll push those all up together (with SI fig and tables)