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leekgroup / derfinder

R package for DER Finder, a method for differential expression analysis of RNA-seq data
http://biostatistics.oxfordjournals.org/content/early/2014/01/06/biostatistics.kxt053.short?rss=1
MIT License
22 stars 11 forks source link

Error in countReads.py #6

Closed samirwadhawan closed 10 years ago

samirwadhawan commented 10 years ago

I have tried running it multiple times and this is the error I am receiving.

Traceback (most recent call last): File "countReads.py", line 144, in countReadlets(options.file, options.output, options.kmer, options.chrom, stranded) TypeError: countReadlets() takes exactly 4 arguments (5 given)

seems like 'strand' is missing in def of countReadlets() . Also noticed that in the last line of the code all arguments have options.argument while stranded does not.

countReadlets(options.file, options.output, options.kmer, options.chrom, stranded)

alyssafrazee commented 10 years ago

fixed (added "stranded" to def of countReadlets).

alyssafrazee commented 10 years ago

also, note that this functionality will likely be available soon in the efficient version of derfinder, so stay tuned to that repo as well.