Class checks - Githubissues

leekgroup / swfdr

Science-wise false discovery rate package

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Class checks #2

Closed tkonopka closed 4 years ago

tkonopka commented 4 years ago

Primary change:

replaced class checks of the form class(x)=="classname" to is(x, "classname"). This should avoid errors generated in the recent Bioconductor checks.

Additional changes:

a minimal README.md for the github repository
added @noRd tags to avoid generating Rd files for internal functions
shortened some long code lines for readability
replaced @import tags by @importFrom with spectific functional names
added @examples code for lm_qvalue
added URL and BugReports fields into DESCRIPTION file
added a few patterns in .Rbuildignore to avoid cached vignette files

All the additional changes are stylistic / convenience edits. All functionality should be unchanged.