Plot methods - Githubissues

leekgroup / swfdr

Science-wise false discovery rate package

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Plot methods #3

Closed tkonopka closed 4 years ago

tkonopka commented 4 years ago

Suggestions for plot and hist methods for lm_pi0 and lm_qvalue objects

plot method shows scatter plots comparing conditioned q-values to unconditioned q-values, or conditioned q-values to p-values
hist method shows distributions of pi0 estimates
swfdrQ vignette demonstrates the plots
swfdrQ vignette includes some misc edits in wording

Code changes:

the lm_pi0 function now computes and records q-values both with and without adjustment for covariates.
plots are styled using Rcssplot cascading style sheets