Open punkpony opened 4 years ago
Not sure how helpful this will be, but here is what I get for a successful build with LigParGen v2.1 (even with that strange smiles string for phenol):
$ LigParGen -s 'c1ccc(cc1)O' -r UNK -c 0 -o 0 -l LBCC converter is activated 1 molecule converted 96 audit log messages MOLECULE HAS A CHARGE of 0 DONE WITH OPENMM DONE WITH Q DONE WITH XPLOR DONE WITH CHARMM/NAMD DONE WITH GROMACS DONE WITH LAMMPS DONE WITH DESMOND
$ LigParGen -h usage: LigParGen [-h] [-r RESNAME] [-s SMILES] [-m MOL] [-p PDB] [-o {0,1,2,3}] [-c {0,-1,1,-2,2}] [-l]
Ligand Parameter Generator Based on
Jorgensen group's OPLS-AA/CM1A(-LBCC) FF
Created on Mon Feb 15 15:40:05 2016
@author: Leela S. Dodda leela.dodda@yale.edu
@author: William L. Jorgensen Lab
I'm also having the same no .mol issue.
LBCC converter is activated
OpenBabel01122221343D
*** Open Babel Error in OpenAndSetFormat
Cannot open BNZ.mol
1 molecule converted
Traceback (most recent call last):
File "/home/gemechis/anaconda3/bin/LigParGen", line 33, in
any solution for this?
Hi!
I think there is a bug in LigGenPar 2.3 command line
I have installed it as advised, liked BOSS, etc.. when I do a test with smiles I get such output:
There shouldn't be either
'-i'
error or the.mol
one.if I instead go and provide .pdb file i still have the
.mol
problem