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PDB/EMDB to Model should allow viper2eman conversion #307

Closed leginonbot closed 7 months ago

leginonbot commented 7 months ago

Author Name: Neil Voss (@vosslab) Original Redmine Issue: 307, https://emg.nysbc.org/redmine/issues/307 Original Date: 2010-03-31

need to implement this

leginonbot commented 7 months ago

Original Redmine Comment Author Name: Neil Voss (@vosslab) Original Date: 2010-03-31T18:10:02Z

web page changed in r13359.

leginonbot commented 7 months ago

Original Redmine Comment Author Name: Neil Voss (@vosslab) Original Date: 2010-03-31T19:00:08Z

python fixed in r13362.

leginonbot commented 7 months ago

Original Redmine Comment Author Name: Neil Voss (@vosslab) Original Date: 2010-05-13T01:56:16Z

Gabe, any chance you can test this. It should work on the your current version.

leginonbot commented 7 months ago

Original Redmine Comment Author Name: Gabriel Lander (@gclander) Original Date: 2010-05-13T16:46:07Z

viper2eman works only if input pdb is in viper orientation, but there is no check for this. Poliovirus (2plv), for example, is not converted to eman orientation correctly using appion. Maybe in the future all icosahedral virus pdb's should be downloaded from viperdb instead of rcsb. Otherwise we can close this issue.

leginonbot commented 7 months ago

Original Redmine Comment Author Name: Neil Voss (@vosslab) Original Date: 2010-05-13T18:51:58Z

We'll have to file a new bug for it to work on more PDB files.