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RELION 2d Alignment default diameter #4232

Open leginonbot opened 8 months ago

leginonbot commented 8 months ago

Author Name: Neil Voss (@vosslab) Original Redmine Issue: 4232, https://emg.nysbc.org/redmine/issues/4232 Original Date: 2016-05-31 Original Assignee: Neil Voss

Bridget:

There are also some issues with doc pop up meanings and defaults - the worst one is that the diameter default if wrong and means that only the very center of the images is focused on. I think the diameter default should either be something that was entered earlier or based on the box size.

leginonbot commented 8 months ago

Original Redmine Comment Author Name: Neil Voss (@vosslab) Original Date: 2016-05-31T15:58:16Z

Looks like I forgot to convert pixels into Angstroms on this page. Testing fix right now.

leginonbot commented 8 months ago

Original Redmine Comment Author Name: Bridget Carragher (@bcarr-czi) Original Date: 2016-06-01T14:54:34Z

Testig now. Using http://192.168.4.37/betamyamiweb/processing/checkAppionJob.php?expId=2177&jobId=713

But I notice that there are inputs requested for: Alignment Parameters Particle Diameter (Ångstroms) Number of References Maximum Number of Iterations In-plane Rotation Angle Interval (degrees) Regularisation parameter Flatten Solvent on References Zero Masking

And the pop up doc on the particle diameter says "only needed for particle picking display" - is that correct or just a left over from before? And the diameter default is still wrong at 96 or something instead of the correct 180A.