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Create a minimal recon uploader to help keep track of reconstructions done outside of Appion. #4905

Open leginonbot opened 7 months ago

leginonbot commented 7 months ago

Author Name: Neil Voss (@vosslab) Original Redmine Issue: 4905, https://emg.nysbc.org/redmine/issues/4905 Original Date: 2017-04-14 Original Assignee: Neil Voss

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leginonbot commented 7 months ago

Original Redmine Comment Author Name: Yong Zi Tan (Yong Zi Tan) Original Date: 2017-08-16T14:58:09Z

Dear Neil,

Do you mind if I take a stab at this, specifically with a Relion 3D refinement result? Thanks.

leginonbot commented 7 months ago

Original Redmine Comment Author Name: Yong Zi Tan (Yong Zi Tan) Original Date: 2017-08-16T15:03:58Z

To have: Resolution Number of particles Number of iterations Folder NGL viewer to look at the volume

leginonbot commented 7 months ago

Original Redmine Comment Author Name: Gabriel Lander (@gclander) Original Date: 2017-09-05T20:08:21Z

I had to fix the "recenter" part of the code - the recentering wasn't actually running when the option was set because the syntax was wrong. More importantly - the Origin_x & y are in pixels relative to the extracted particles, so they have to be scaled relative to the original micrograph. Also, these values have to be subtracted, not added, from the original particle coordinates. I've implemented the recentering the same way that Sjors does it in his preprocessing.cpp code. Should be recentering properly now. I also removed the requirement for X11 forwarding for the matplotlib stuff.