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import RELION autopicked particles #5180

Open leginonbot opened 6 months ago

leginonbot commented 6 months ago

Author Name: Gabriel Lander (@gclander) Original Redmine Issue: 5180, https://emg.nysbc.org/redmine/issues/5180 Original Date: 2017-08-30 Original Assignee: Gabriel Lander

added functionality to import RELION autopicked particles into appion. the "--files" parameter requires the full path with an asterisk, and the suffix after the asterisk. i.e. --files="/gpfs/home/picked/*_autopick.star"

leginonbot commented 6 months ago

Original Redmine Comment Author Name: Gabriel Lander (@gclander) Original Date: 2017-08-30T06:18:32Z

we should probably change the function name from "uploadEMANParticles.py" to just "uploadParticles.py"

leginonbot commented 6 months ago

Original Redmine Comment Author Name: Anchi Cheng (@anchi2c) Original Date: 2017-08-30T17:37:07Z

It is better using subclasses for different functions that shares common feature. I also notice that there is uploadAppionParticles.py

Maybe call yours uploadRelionParticles.py. When I get a chance I will create base class for all three of them if you can't.

leginonbot commented 6 months ago

Original Redmine Comment Author Name: Sargis Dallakyan (@dallakyan) Original Date: 2018-11-14T01:31:09Z

Added "Relion star" to web ui so users can see this feature.

Also, Micah has found that it is not working with _extract.star files. Looked into this; _extract.star files start with something like: @# RELION; version 3.0-beta-2@ This was causing parser to break. Fixed this so it now skips lines starting with "#".

It will be live in our servers tomorrow after nightly updates.