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If a PBS job file is modified on the remote cluster, uploadrecon will upload the wrong job parameters #874

Open leginonbot opened 5 months ago

leginonbot commented 5 months ago

Author Name: Anchi Cheng (@anchi2c) Original Redmine Issue: 874, https://emg.nysbc.org/redmine/issues/874 Original Date: 2010-09-13 Original Assignee: Pick-Wei Lau

The job file on the data outdir is saved before job submission. If the job file is modified at the remote cluster as often happens when cluster error occurs, the modification is not transferred back to data outdir locally. The modification is not necessary if the cluster job works all the time but it does not happens during development.

leginonbot commented 5 months ago

Original Redmine Comment Author Name: Anchi Cheng (@anchi2c) Original Date: 2010-09-14T00:01:19Z

Added the transferring command in r14782. The real change need to be copied to the remote_cluster.php such as garibaldi.php at NRAMM. Also not sure if it needs to be modified on default_cluster,php_template instead.

Testing (only matters on garibaldi or other cluster that can not run the job from data outdir):

  1. make sure you update your garibaldi.php
  2. create a refinement job with emanJobGen.php. Submit the job to garibaldi.
  3. abort the job.
  4. log into garibaldi and change some print statement in the jobfile in its appion/10xxxxxx/recon/emanreconxx directory.
  5. resubmit the job from garibaldi.
  6. after the job is complete, check the job file in data outdir to see if it reflects the change.

Dmitry or Pick-Wei can test.

leginonbot commented 5 months ago

Original Redmine Comment Author Name: Eric Hou (Eric Hou) Original Date: 2010-09-14T14:49:48Z

Pick-Wei, Can you please test this on

http://cronus3/betamyamiweb

Thanks.