legumeinfo / LIS-autocontent

Scrapes the LIS datastore and populates various configs and databases for deployment
Apache License 2.0
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autodetect csi indexes #26

Open adf-ncgr opened 11 months ago

adf-ncgr commented 11 months ago

We have a few species (Pisum sativum, Lens culinaris, Vicia faba) that require csi indexing on their annotations, due to having big chromosomes. I think the autocontent is currently assuming that a tbi index will exist, but it should probably test the assumption and look for a csi index if the tbi is not found