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Change Medicago truncatula chromosome names in GWAS files on DSCensor #2

Closed svengato closed 4 years ago

svengato commented 4 years ago

Was 1-8, should be chr1-chr8

adf-ncgr commented 4 years ago

it must have been a silent chr.

svengato commented 4 years ago

I changed them in the organism file and my remaining local GWAS files. This eliminates species-dependent hard-coding when parsing chromosome names in build.annotations().

adf-ncgr commented 4 years ago

OK great. I think my task here properly ought to be getting the medicago GWAS into the datastore using the new file formats, so that's what I'll do (eventually)

svengato commented 4 years ago

My mistake - the remote Medicago truncatula GWAS files already have the chromosome names in the expected format. I have corrected this in commit 38896d5...