legumeinfo / ZZBrowse

Other
1 stars 1 forks source link

Genomic linkage near chromosome ends #29

Open svengato opened 3 years ago

svengato commented 3 years ago

Normally we select a gene and N neighbors on either side, ending up with a list of (2N + 1) gene families to send to the micro-synteny-search service. But suppose the central gene is less than N genes from one end of the chromosome. Should we (a) take as many as we can from the end, and N neighbors from the interior side? (ending up with as few as N + 1) (b) take (2N + 1) genes from the end anyway?

The current behavior is (b).