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legumeinfo / chickpeamine

A mine containing chickpea (desi) and chickpea (kabuli) genomes.
GNU Lesser General Public License v3.0
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chickpeamine is outside the circle of legume friends? #2

Closed adf-ncgr closed 7 years ago

adf-ncgr commented 7 years ago

for example, everyone else is very cordial to this peanut gene: https://mines.legumeinfo.org/peanutmine/portal.do?class=Gene&externalids=Aradu.68YSI and it looks like there are chickpea genes who want to be friends: https://legumeinfo.org/chado_phylotree/phytozome_10_2.59211447?hilite_node=aradu.Aradu.68YSI.1

someone is making the effort (if you're patient enough): https://mines.legumeinfo.org/chickpeamine/portal.do?class=Gene&externalids=Ca_24703_gene

the two things that seem significant as to underlying cause: no chickpea gene homologues appear in the peanut (or bean and probably others) gene page: https://mines.legumeinfo.org/peanutmine/portal.do?externalids=Aradu.68YSI&class=Gene&origin=ChickpeaMine (while the chickpea gene page does have the homologues listed to the other species)

chickpeamine does not even appear in the list of Links to other Mines in the peanut gene page.

it's as if they are allergic to falafel?! that's pretty rich, esp. coming from a species like peanut.

sammyjava commented 7 years ago

Those are ancient mines. We're testing mines on chama, not production, pay no attention to behavior of production mines. Those homologies will appear when those mines are rebuilt with the new set of organisms.

adf-ncgr commented 7 years ago

there's nothing worse than moldy falafel