legumeinfo / datastore-issues

mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance
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Expression collections failing validation #113

Closed sammyjava closed 2 years ago

sammyjava commented 2 years ago

sammyjava commented 2 years ago

FYI I yanked these from mine loading. I don't suppose we really need them. But they are incomplete expression sets.

We do have:

sammyjava commented 2 years ago

I moved CDCFrontier.gnm1.ann1.expr.C14F to the private DS. This is actually ICC4958 reads from Singh_Garg_2013 mapped to CDCFrontier, which I've never loaded. It lacks a README, etc. The samples are the same. If someone decides that it's of value to look at desi gene expression mapped to kabuli genes, this set can be built out and put on the public DS.

sammyjava commented 2 years ago

I moved glyma collection Wm82.gnm1.ann1.expr.Z679 to a backup on the private DS. This is far from being an expression collection, it's just a bunch of BAMs.