legumeinfo / datastore-issues

mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance

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Add Phaseolus coccineus genome from phytozome #182

Closed adf-ncgr closed 4 months ago

adf-ncgr commented 8 months ago

https://phytozome-next.jgi.doe.gov/info/Pcoccineus_v1_1

Main steps for adding new genome and annotation collections

Genus/species/collection names:

What are the collection types and names? (currently awaiting full yuckification in private area of datastore)

Phaseolus/coccineus/genomes/TBD
Phaseolus/coccineus/annotations/TBD
[ ] Add collection(s) to the Data Store
[ ] Validate the README(s)
[ ] Update about_this_collection.yml
[ ] Calculate AHRD functional annotations
[ ] Calculate gene family assignments (.gfa)
[ ] Add to pan-gene set
[ ] Load relevant mine
[ ] Add BLAST targets
[ ] Incorporate into GCV
[ ] Update the jekyll collections listing
[ ] Update browser configs
[ ] run BUSCO

StevenCannon-USDA commented 4 months ago

Closing this, as I inadvertently added a new issue for this task (and partly filled out the task list). See https://github.com/legumeinfo/datastore-issues/issues/194