Open StevenCannon-USDA opened 4 months ago
@StevenCannon-USDA AHRD/BUSCO/GFA bits completed, let me know if you think this collection is ready to move out of the annex then will proceed with subsequent steps.
Looks good to me! I don't think of reasons to delay for this one.
Main steps for adding new genome and annotation collections
Genus/species/collection names:
Phaseolus/coccineus/genomes/PHA8298.gnm1.PYJ1
Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14
[X] Add collection(s) to the Data Store, including commits to datastore-metadata (2024-02-13: at annex)
[X] Validate the README(s)
[x] Update about_this_collection.yml
[x] Calculate AHRD functional annotations
[x] Calculate gene family assignments (.gfa)
[X] Add to pan-gene set
[ ] Load relevant mine
[ ] Add BLAST targets
[ ] Incorporate into GCV
[ ] Update the jekyll collections listing
[ ] Update browser configs
[x] run BUSCO
[ ] Update DSCensor
[ ] Add LINKOUTS to datastore, refresh linkout service