So Rex discovered that Fiskeby lacked gene descriptions, then we discovered that the current Datastore GFF contains them, but they're not AHRD-generated with GO terms. This means the mine will not associate GO terms with any of those genes. This is Bad.
I propose that the MINE LOADER (not the YAML validator) require that GO terms be present in an annotation GFF. This will alert me to task @adf-ncgr with generating a new GFF and we won't get genes in the mines that don't have any functional information.
This seemed like the appropriate repo to post this since it is a requirement on Datastore content if you want to get an annotation into a mine. But you probably won't be alerted until the next mine build, which is fine since presumably the annotation is newer than the previous mine build.
So Rex discovered that Fiskeby lacked gene descriptions, then we discovered that the current Datastore GFF contains them, but they're not AHRD-generated with GO terms. This means the mine will not associate GO terms with any of those genes. This is Bad.
I propose that the MINE LOADER (not the YAML validator) require that GO terms be present in an annotation GFF. This will alert me to task @adf-ncgr with generating a new GFF and we won't get genes in the mines that don't have any functional information.
This seemed like the appropriate repo to post this since it is a requirement on Datastore content if you want to get an annotation into a mine. But you probably won't be alerted until the next mine build, which is fine since presumably the annotation is newer than the previous mine build.