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placeholder repo for issues migrating from JIRA system, to be moved to their appropriate places later
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Revamp the old species GFF files and update db #539

Open adf-ncgr opened 8 years ago

adf-ncgr commented 8 years ago

Idea here is to retrofit the old species GFF by adding GO terms and IPR terms etc in ontology_term and Dbxref attributes of 9th column in GFF, just like they were done for newer species such as 'adzuki bean' and 'desi chickpea'.
And also need to update chado db to have the feature_cvterm/feature_dbxref rows as if they had been loaded the current loading way originally.

[LEGUME-573] created by peu

adf-ncgr commented 7 years ago

I think this is still relevant. Probably ought to be done in conjunction with efforts to get the DataStore populated with gffs that are "canonical" in some sense, though not sure we will come to agreement on what that means (ie whose chromosome naming will prevail: GBrowse or chado?)
in any case, I think getting the GO terms in the db consistently to make them usable by the ontology search mechanism is still on the table?

by adf_ncgr