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legumeinfo / jira-issues

placeholder repo for issues migrating from JIRA system, to be moved to their appropriate places later
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Customize tripal_analysis #670

Open adf-ncgr opened 7 years ago

adf-ncgr commented 7 years ago

Expand to show genome assembly overview if analysis represents a genome assembly.

[LEGUME-704] created by ecannon

adf-ncgr commented 7 years ago

would be great to discuss what is going to go into genome assembly overview. recently initiated some prototypical efforts that might be somewhat related to what you have in mind here...

by adf_ncgr

adf-ncgr commented 7 years ago

There are templates and a loader for sequence metadata based on MIxS and its plant extension.

An example page is here:
https://peanutbase-stage.usda.iastate.edu/organism/Arachis/duranensis?pane=genome.

The loader and spreadsheets for the two Arachis species are here: https://github.com/legumeinfo/chado_metadata_loaders.

by ecannon

adf-ncgr commented 7 years ago

thanks, this refreshes my memory of you having shown this some time ago. It looks a bit orthogonal to the nascent effort I was describing, which would be more directed toward assembly/annotation statistics. but there is definitely potential for synergy so let's try to keep each other aware of activities (admonition to self).

by adf_ncgr