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legumeinfo / microservices

A collection of microservices developed and maintained by the Legume Information System
https://legumeinfo.org/
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LIS Linkouts from Gene Search #620

Open jd-campbell opened 3 months ago

jd-campbell commented 3 months ago

On the link outs from Gene Search I was looking for a easy way to quickly get the gene sequence but the link out list only has LegumeMine which has not sequence data.

I am requesting either add the species specific mine link out to the gene or even better a link to download the gene sequence.

adf-ncgr commented 1 month ago

@jd-campbell can you clarify what you mean about LegumeMine not having sequence data? It certainly should, e.g. https://mines.legumeinfo.org/legumemine/sequenceExporter.do?object=483367048 (from clicking the FASTA button on https://mines.legumeinfo.org/legumemine/gene:medtr.A17_HM341.gnm4.ann2.Medtr4g113520)

I can add genus-focused mines to the linkouts too, but just want to make sure we're on the same page. I believe the main way in which the genus-focused mines differ from legumemine at this point is with respect to inclusion of genetic data (QTLs/GWAS).