legumeinfo / tripal_phylotree

LIS project- tripal module for chado phylogeny and gene families
GNU General Public License v2.0
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Can't search for gene families associated with a gene model #21

Open ekcannon opened 6 years ago

ekcannon commented 6 years ago

Yes, this can be done via the gene search page, but if a user is focused on gene families, it may not be obvious to go use the gene search page instead.

adf-ncgr commented 6 years ago

yes, this a good one, but also a bit subtle due to the somewhat heterogeneous nature of the way we handle gene families. Ideally, such a search would be able to find families for:

if we stick with the current drupal-views-based approach, then we'll probably need to put the genelist for a family into a tsvector in the row for the gene family. in any case, since I think we won't be able to rely on things in the family being in the tree, however we accomplish this should probably access the association through the featureprop rows that represent gene family assignments.