We have an mzmldef param that takes a file with implicit fields (they have to be in right order). It is maybe nicer to use an explicit header, like the husensofteng/pgt pipeline does. Then we can share the code for parsing also between the pipelines.
This pipeline could also be rewritten to DSL2 for future-proofing and more sharing/importing of modules, at least within the lab.
We have an mzmldef param that takes a file with implicit fields (they have to be in right order). It is maybe nicer to use an explicit header, like the husensofteng/pgt pipeline does. Then we can share the code for parsing also between the pipelines.
This pipeline could also be rewritten to DSL2 for future-proofing and more sharing/importing of modules, at least within the lab.