Integrate moFF for label-free quantification

lehtiolab / proteogenomics-analysis-workflow

IPAW: a Nextflow workflow for proteogenomics

24 stars 9 forks source link

Integrate moFF for label-free quantification #7

Open yafeng opened 5 years ago

yafeng commented 5 years ago

Currently, the IPAW pipeline allows searching of label free data, but no quantification results. moFF is a MaxQuant equivalent command-line tool for MS1 quantification, including match-between-runs funtionality as well.

glormph commented 5 years ago

Other wise https://github.com/fickludd/dinosaur is also supposed to be a good MS1 quantifier.

yafeng commented 5 years ago

Yes, that is also a nice alternative.