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leiferlab / worm-functional-connectivity

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export tsv for wild-type and unc-31 #8

Open bdsinger opened 1 year ago

bdsinger commented 1 year ago

Have been manually replacing "mock" with, say, "wild-type" in use_mock_atlas_scalar.py then running it with the --pairwise-output option to create e.g., wild-type.tsv from wild-type.pickle. To streamline that, would be nice to have, say, export_atlas_scalar.py where the atlas can be specified. Perhaps I am overlooking something, but I went ahead and forked this repo and created such a script.

Will attach a forked pull request next, but really all it is is another script, export_atlas_scalar.py in the scripts dir, that adds an --atlas option to use_mock_atlas_scalar.py. Is tempting to just attach it here, but I might as well go through with the PR. I could use the practice!

lparsons commented 1 year ago

I'm pretty sure this was all taken care of in #9. Can we close this?