download uniprot data - Githubissues

This issue is complete when uniprot data is downloaded to UFRC for PPDbench. I have included a brief protocol that can be expanded on with screenshots and better documentation to remove potential ambiguity in the instructions.

Used as input data for Step 4 (step1_pdb_process.py)

step 3 will generate "df_predict_det3" file with uniprot IDs
https://www.uniprot.org/
select "search" in the top right search bar
select "customize columns"
select "Protein names", "Sequence", "Protein families" & then close.
select "List" in the top search bar. this will bring you to an area to enter "Uniprot IDs" from Step3. Select search.
select "map IDs"
download data
select TSV format, don't compress, customize the columns & rearrange to meet: From Entry Protein names Sequence Protein families
once the file is downloaded, open file, rename files for script input, and run step 4.

lemaslab / CAMP

download uniprot data #2