Check code qualify using pylint (if using Python) or lintr (if using R) and improve code quality based on checking results.
Modify main.nf to integrate your new code to RUMP and test your code (i.e., add volcano plot for data before/after blank subtraction, add volcano plot figure to MultiQC report).
Integrate volcano plot to statistical analysis. Sample data can be used to test your code.
Add volcano plot (example plot can be found here: https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html) to the pipeline. Sample data can be used to test your code. Steps:
main.nfto integrate your new code to RUMP and test your code (i.e., add volcano plot for data before/after blank subtraction, add volcano plot figure to MultiQC report).