Add negative mode for pathway analysis

lemaslab / rump

A Reproducible Untargeted Metabolomics Data Processing Pipeline

MIT License

11 stars 8 forks source link

Add negative mode for pathway analysis #92

Open XinsongDu opened 3 years ago

XinsongDu commented 3 years ago

command in Nextflow like:

python3 !{python_mummichog_input_prepare} -i !{neg_vd_both_nobg} -o !{params.data_neg_nobg_both_mummichog} &&
mummichog1 -f !{params.data_neg_nobg_both_mummichog} -o !{params.data_neg_nobg_both_mummichog_out} -c !{params.cutoff}