pyGenClean ERROR duplicated_snps: ATGCATGC: unknown allele

lemieuxl / pyGenClean

Automated genetic data clean up procedure in Python.

GNU General Public License v3.0

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pyGenClean ERROR duplicated_snps: ATGCATGC: unknown allele #23

Open jgrundstad opened 8 years ago

jgrundstad commented 8 years ago

I'm running into an error in the duplicated_snps module:

pyGenClean ERROR] duplicated_snps: ATGCATGC: unknown allele

Is it possible to process datasets that include deletion/insertion variants? Let me know if I can clarify further.

Thanks!

lemieuxl commented 8 years ago

For now, it is not possible to process insertion/deletion variants.

We are planning to add this feature in a future release, but this might take some time since we want to upgrade the different components to improve performance.