Replace OBITools and MOTHUR by seqkit and vsearch where possible

lentendu / DeltaMP

A flexible, reproducible and resource efficient metabarcoding amplicon pipeline for HPC

GNU General Public License v3.0

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Replace OBITools and MOTHUR by seqkit and vsearch where possible #164

Open lentendu opened 1 year ago

lentendu commented 1 year ago

Will avoid to rely on python 2.7 for OBITools Faster processing for seqkit and less cumbersome for vsearch compared to mothur obiuniq -p replaced by a awk script

Some procedures cannot apply: pre.cluster ...