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lentendu / DeltaMP

A flexible, reproducible and resource efficient metabarcoding amplicon pipeline for HPC
GNU General Public License v3.0
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Accept gz compress database fasta files #183

Open lentendu opened 1 year ago

lentendu commented 1 year ago

Can reduce by 20X the size of databases. Vsearch does not accept udb.gz but accept fasta.gz for --db field Mothur does not accept gzipped files, need to gunzip before and gzip after.