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lentendu / NetworkNullHPC

OTU co-occurrence network inferrence base on null model for HPC
MIT License
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Change OTU matrix cleaning order #10

Closed lentendu closed 4 years ago

lentendu commented 4 years ago

First remove low occurrence OTUs

Then remove low abundance samples

The other way around can maintain samples with low abundance when most OTUs in these samples have low occurrence OTUs, which are subsequently removed