lentendu / NetworkNullHPC

OTU co-occurrence network inferrence base on null model for HPC
MIT License
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Group spearman bootstraps for small matrices #2

Closed lentendu closed 6 years ago

lentendu commented 6 years ago

Compute observed and null matrices Spearman's rho for multiple seeds in each array job to reduce time associated with job queueing (initialisation, completion). For example, compute 10 seeds per array for matrices with less than 1000 OTUs. The runtime should almost reach (but not overpass) the maximum time limit for the short queue.