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lentendu / NetworkNullHPC

OTU co-occurrence network inferrence base on null model for HPC
MIT License
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Add an option to control hdf5 storage chunk size #9

Open lentendu opened 4 years ago

lentendu commented 4 years ago

For example -c chunk_size, default value: 1e5

A lower value would increase parallelisation with lower memory request for the edge step (currently 12G for 1 thread).

Need to adapt slurm memory request to this chunk size for the edge step.