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leoisl
/
plasnet
Clustering, visualising and exploring plasmid networks
MIT License
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officially_new_plasnet
#63
Zhuo-DIAO
closed
2 weeks ago
0
chore(main): release 0.6.0
#62
leoisl
closed
2 weeks ago
1
Switch to unweighted classification
#61
leoisl
closed
2 weeks ago
1
fix: mark with stars the nodes we actually use in clustering as hubs
#60
leoisl
opened
3 weeks ago
0
Optionally output cytoscape json files
#59
babayagaofficial
closed
2 weeks ago
1
chore(main): release 0.5.1
#58
leoisl
closed
6 months ago
1
fix: fix bug: key error exception when building RH PLSDB DB
#57
leoisl
closed
6 months ago
0
bug: key error exception when building RH PLSDB DB
#56
leoisl
closed
6 months ago
0
Second iteration hub plasmids not marked in visualisation
#55
babayagaofficial
opened
6 months ago
3
chore(main): release 0.5.0
#54
leoisl
closed
8 months ago
1
feat: now creating a hub_plasmids.csv file when running the plasnet type command explicitly listing each hub plasmid
#53
leoisl
closed
8 months ago
0
chore(main): release 0.4.2
#52
leoisl
closed
8 months ago
1
refactor: switching terminology from blackhole to hub
#51
leoisl
closed
8 months ago
0
chore(main): release 0.4.1
#50
leoisl
closed
8 months ago
1
fix: adds param use_cached to BlackholeGraph._get_blackhole_plasmids(), solving the slowdown introduced in releases v0.3.3 and v0.3.4
#49
leoisl
closed
8 months ago
0
Switch terminology from blackhole to hub
#48
leoisl
closed
8 months ago
0
Create a blackholes.csv file in the output explicitly denoting each blackhole in each community
#47
leoisl
closed
8 months ago
0
chore(main): release 0.4.0
#46
leoisl
closed
8 months ago
1
chore(main): release 0.4.0
#45
leoisl
closed
8 months ago
0
ci: updating the messages in release please changelog
#44
leoisl
closed
8 months ago
0
chore(main): release 0.4.0
#43
leoisl
closed
8 months ago
0
feat: now we can provide metadata to plasmids (param --plasmids-metadata in plasnet split)
#42
leoisl
closed
8 months ago
0
Recent changes (v0.3.3 and v0.3.4) might have made plasnet slow for very large graphs
#41
leoisl
closed
8 months ago
2
Make --add-sample-hits subcommand accept communities
#40
leoisl
opened
8 months ago
0
chore(main): release 0.3.4
#39
leoisl
closed
9 months ago
1
fix: iteratively removing blackholes until convergence
#38
leoisl
closed
9 months ago
0
chore(main): release 0.3.3
#37
leoisl
closed
9 months ago
1
fix: fix a bug where plasnet was not correctly recognising blackholes in type command
#36
leoisl
closed
9 months ago
0
chore(main): release 0.3.2
#35
leoisl
closed
9 months ago
1
fix: now setting the default colour for blackhole plasmids instead of erroring out with KeyError
#34
leoisl
closed
9 months ago
0
chore(main): release 0.3.1
#33
leoisl
closed
9 months ago
1
ci: re-enabling python versions 3.8, 3.9 and 3.10 in the CI tests
#32
leoisl
closed
9 months ago
0
chore(main): release 0.3.1
#31
leoisl
closed
9 months ago
0
docs: small fix to the link of add-sample-hits output in README.md
#30
leoisl
closed
9 months ago
0
chore(main): release 0.3.0
#29
leoisl
closed
9 months ago
1
feat: add sample hits subcommand
#28
leoisl
closed
9 months ago
0
chore(main): release 0.2.1
#27
leoisl
closed
9 months ago
0
refactor: Visualisation refactor
#26
leoisl
closed
9 months ago
0
ACT images on the edges
#25
leoisl
opened
9 months ago
0
Add number of genes, number of hit genes to visualisation
#24
leoisl
closed
8 months ago
1
Add hit proportion filter
#23
leoisl
closed
8 months ago
1
Add bottom table with metadata/data about selected nodes
#22
leoisl
closed
8 months ago
1
Avoid using same colours for different neighbouring typings
#21
leoisl
opened
9 months ago
0
chore(main): release 0.2.0
#20
leoisl
closed
9 months ago
1
New feature: edges now show the split and type distance in their labels and other bug fixes
#19
leoisl
closed
9 months ago
0
chore(main): release 0.1.7
#18
leoisl
closed
9 months ago
1
ci: now correctly making release-pypi deploy to pypi once a release is published
#17
leoisl
closed
9 months ago
0
chore(main): release 0.1.6
#16
github-actions[bot]
closed
9 months ago
1
ci: allowing release-pypi workflow to be manually triggered
#15
leoisl
closed
9 months ago
0
chore(main): release 0.1.5
#14
github-actions[bot]
closed
9 months ago
1
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