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leoliuf / MRiLab

A Numerical Magnetic Resonance Imaging (MRI) Simulation Platform
https://leoliuf.github.io/MRiLab/
BSD 2-Clause "Simplified" License
204 stars 64 forks source link

Installation on Ubuntu #15

Closed ampaschoal closed 5 years ago

ampaschoal commented 6 years ago

Hi,

I am trying to install MRiLab on Ubuntu. I could to compile all itens but not the ISMRMRD. In fact, I could to compile it, but when I do the cmake ../ command in /MRiLab/Lib/src/build the following error occur.

Then I noted that the file ismrmrd.hxx does not exist. It wasn't generated.

Can anybody imagine what I am doing wrong?

ISMRMRD and Boost Found, MRiLab to Gadgetron interface will be compiled CMake Error: The following variables are used in this project, but they are set to NOTFOUND. Please set them or make sure they are set and tested correctly in the CMake files: ISMRMRD_XSD_INCLUDE_DIR used as include directory in directory /home/apaschoal/Documents/MRiLab/Lib/src/interface/DoMatToHDF5 used as include directory in directory /home/apaschoal/Documents/MRiLab/Lib/src/interface/DoMatToHDF5 used as include directory in directory /home/apaschoal/Documents/MRiLab/Lib/src/interface/DoMatToHDF5 used as include directory in directory /home/apaschoal/Documents/MRiLab/Lib/src/interface/DoMatToHDF5 used as include directory in directory /home/apaschoal/Documents/MRiLab/Lib/src/interface/DoMatToHDF5 used as include directory in directory /home/apaschoal/Documents/MRiLab/Lib/src/interface/DoMatToHDF5 used as include directory in directory /home/apaschoal/Documents/MRiLab/Lib/src/interface/DoMatToHDF5

Thank you,

André.

leoliuf commented 6 years ago

Please check if you can find ismrmrd.hxx in the ISMRMRD install path Please see FindIsmrmrd.cmake

#   ISMRMRD_XSD_INCLUDE_DIR  - folder containing ismrmrd.hxx (autogenerated from xsd schema)
FIND_PATH( ISMRMRD_XSD_INCLUDE_DIR ismrmrd.hxx
HINTS $ENV{ISMRMRD_HOME} PATHS /usr/local /usr PATH_SUFFIXES schema ismrmrd ismrmrd/schema)
ampaschoal commented 6 years ago

Thank you for your attention.

That is my problem. I can't find ismrmrd.hxx.

I already set the correct paths on FindIsmrmrd.cmake.

ampaschoal commented 6 years ago

I am using xsd version 4.0.0.7.

Sould I try older versions?

leoliuf commented 6 years ago

ISMRMRD is evolving. This current MRiLab version is tested using ISMRMRD 0.5.0, so it should work with XSD version supported by ISMRMRD 0.5.0.

ampaschoal commented 6 years ago

I'll try using ismrmrd 0.5.0 on monday in my PC in the university, but it might work now. I noted that in cmake folder of ismrmrd 0.5.0 there is the file FindXSD.cmake and findxerces. Both of this files doesn't exist in ismrmrd 1.1 version.

I'll let you know if it work, but now I thing that will run! Thank you!

ampaschoal commented 6 years ago

The previous error was solved using ISMRMRD 0.5.0

However now I have others errors. Could you please tell me the version of cuda vtk and gadgetron that MRiLab is tested?

leoliuf commented 5 years ago

The information about the version of cuda, vtk and gadgetron that MRiLab is tested can be found in the 1.3 section (Table 1.1) of the user guide.