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leppott / XC95

Extirpation analysis (XC95) for benthic macroinvertebrates and fish for environmental variables.
https://leppott.github.io/XC95/
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tolerance function - define output fields #9

Closed leppott closed 6 years ago

leppott commented 6 years ago

Need to define, in the help file, the fields in the output.

names(cont.opt) [1] "tnames" "N" "min_ob" "X50_th_ob" "X95_th_ob"
[6] "max_ob" "Opt_WA" "Tol_WA" "CDF_50_th_Abund" "CDF_95_th_Abund" [11] "CDF_50_th_PA" "CDF_95_th_PA" "CDF_wt_50_th" "CDF_wt_95_th" "LRM_50_th"
[16] "LRM_95_th" "QLRM_50_th" "QLRM_95_th" "Opt_qlrm" "Tol_qlrm"
[21] "GAM_50_th" "GAM_95_th" "ROC"

leppott commented 6 years ago

From the R code some fields are defined using input variables.

varnames <- c("N", "min_ob", paste(taus, "thob",sep=""), "max_ob", "Opt_WA", "TolWA", paste("CDF", taus,"th","Abund", sep =""), paste("CDF", taus,"th","PA", sep ="_"),paste("CDFwt", taus,"th",sep =""), paste("LRM", taus,"th", sep =""),paste("QLRM", taus,"th", sep =""), "Opt_qlrm", "Tolqlrm", paste("GAM",taus, "th", sep=""), "ROC")