lerandc / construction_zone

Modules for generating nanoscale+ atomic scenes, primarily using pymatgen as generators with S/TEM image simulation in mind
GNU General Public License v3.0
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Molecule/Surface Ligand support #4

Open lerandc opened 3 years ago

lerandc commented 3 years ago

General description: Class for keeping molecules around and defining conflicts; ligand class to attach oriented molecules to surface of other objects

perhaps pymatgen has good support? also check out https://pubs.acs.org/doi/10.1021/acs.jcim.0c01438

perhaps for conflict resolution -> assume N atoms small, calculate distance to nearest volumes, check conflict resolution that way; translate atoms instead of deleting