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leschzinerlab / Motion-correction

Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories
MIT License
11 stars 7 forks source link

help prints --dir but its not in the parse options list #1

Closed WolfgangLugmayr closed 8 years ago

WolfgangLugmayr commented 8 years ago

$ runLMBFGS_relion.py -h Usage: runLMBFGS_relion.py --dir= --bin=

mcianfrocco commented 8 years ago

Thanks for point this out @WolfgangLugmayr - that was an extraneous input option that was not used.

All you need is a starfile and a particle radius, and then any other options you'd like, but there are defaults already provided.