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lesgourg / class_public

Public repository of the Cosmic Linear Anisotropy Solving System (master for the most recent version of the standard code; GW_CLASS to include Cosmic Gravitational Wave Background anisotropies; classnet branch for acceleration with neutral networks; ExoCLASS branch for exotic energy injection; class_matter branch for FFTlog)
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cc1: fatal error: classy/python/../python/classy.c: No such file or directory #540

Open akonvisher opened 10 months ago

akonvisher commented 10 months ago

Hello. During the build or make python module I am getting error: cc1: fatal error: /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/classy/classy2.10/class_public-2.10/python/../python/classy.c: No such file or directory compilation terminated. error: command '/usr/bin/gcc' failed with exit code 1 And actually classy.c is not presented in any place. I am getting this message during make, cd python; python setup.py build and even when I am running cobaya install by: cobaya-install cosmo -p cosmo_packages What can cause to it and how to solve? Thanks. Alexey Konvisher

kabeleh commented 10 months ago

Does the python folder get created, when you are in the CLASS folder, and rebuild the project?

cd CLASS
make clean; make

The make clean deletes files from previous build attempts. make (and not make class(!)) builds the project including the python wrapper. This should create the required python folder and the files therein.

akonvisher commented 10 months ago

Thank you for your really quick response. Of course, I did it. See the full listing: Singularity> make clean;make rm -rf /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build; rm -f libclass.a rm -f /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/python/classy.c rm -rf /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/python/build rm -f python/autosetup.py if ! [ -e /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build ]; then mkdir /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build ; mkdir /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build/lib; fi; touch build/.base cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/growTable.c -o growTable.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/dei_rkck.c -o dei_rkck.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/sparse.c -o sparse.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/evolver_rkck.c -o evolver_rkck.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/evolver_ndf15.c -o evolver_ndf15.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/arrays.c -o arrays.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/parser.c -o parser.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/quadrature.c -o quadrature.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/hyperspherical.c -o hyperspherical.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/common.c -o common.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../tools/trigonometric_integrals.c -o trigonometric_integrals.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/input.c -o input.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/background.c -o background.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/thermodynamics.c -o thermodynamics.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/perturbations.c -o perturbations.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/primordial.c -o primordial.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/fourier.c -o fourier.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/transfer.c -o transfer.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/harmonic.c -o harmonic.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/lensing.c -o lensing.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/distortions.c -o distortions.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/RecfastCLASS/wrap_recfast.c -o wrap_recfast.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/heating/injection.c -o injection.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/heating/noninjection.c -o noninjection.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/HyRec2020/hyrectools.c -o hyrectools.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/HyRec2020/helium.c -o helium.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/HyRec2020/hydrogen.c -o hydrogen.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/HyRec2020/history.c -o history.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/HyRec2020/wrap_hyrec.c -o wrap_hyrec.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../external/HyRec2020/energy_injection.c -o energy_injection.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../source/output.c -o output.o cd /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/build;gcc -O3 -fopenmp -g -fPIC -DCLASSDIR='"/home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy"' -DHYREC -I../include -I../external/RecfastCLASS -I../external/heating -I../external/HyRec2020 -c ../main/class.c -o class.o gcc -O3 -fopenmp -g -fPIC -o class build/growTable.o build/dei_rkck.o build/sparse.o build/evolver_rkck.o build/evolver_ndf15.o build/arrays.o build/parser.o build/quadrature.o build/hyperspherical.o build/common.o build/trigonometric_integrals.o build/input.o build/background.o build/thermodynamics.o build/perturbations.o build/primordial.o build/fourier.o build/transfer.o build/harmonic.o build/lensing.o build/distortions.o build/wrap_recfast.o build/injection.o build/noninjection.o build/hyrectools.o build/helium.o build/hydrogen.o build/history.o build/wrap_hyrec.o build/energy_injection.o build/output.o build/class.o -lm ar rv libclass.a build/growTable.o build/dei_rkck.o build/sparse.o build/evolver_rkck.o build/evolver_ndf15.o build/arrays.o build/parser.o build/quadrature.o build/hyperspherical.o build/common.o build/trigonometric_integrals.o build/input.o build/background.o build/thermodynamics.o build/perturbations.o build/primordial.o build/fourier.o build/transfer.o build/harmonic.o build/lensing.o build/distortions.o build/wrap_recfast.o build/injection.o build/noninjection.o build/hyrectools.o build/helium.o build/hydrogen.o build/history.o build/wrap_hyrec.o build/energy_injection.o ar: creating libclass.a a - build/growTable.o a - build/dei_rkck.o a - build/sparse.o a - build/evolver_rkck.o a - build/evolver_ndf15.o a - build/arrays.o a - build/parser.o a - build/quadrature.o a - build/hyperspherical.o a - build/common.o a - build/trigonometric_integrals.o a - build/input.o a - build/background.o a - build/thermodynamics.o a - build/perturbations.o a - build/primordial.o a - build/fourier.o a - build/transfer.o a - build/harmonic.o a - build/lensing.o a - build/distortions.o a - build/wrap_recfast.o a - build/injection.o a - build/noninjection.o a - build/hyrectools.o a - build/helium.o a - build/hydrogen.o a - build/history.o a - build/wrap_hyrec.o a - build/energy_injection.o cp python/setup.py python/autosetup.py cd python; export CC=gcc; python autosetup.py install || python autosetup.py install --user /usr/local/bin/miniconda3/envs/cobaya-new2/lib/python3.8/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !!

    ********************************************************************************
    Please avoid running ``setup.py`` directly.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
    ********************************************************************************

!! self.initialize_options() /usr/local/bin/miniconda3/envs/cobaya-new2/lib/python3.8/site-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated. !!

    ********************************************************************************
    Please avoid running ``setup.py`` and ``easy_install``.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://github.com/pypa/setuptools/issues/917 for details.
    ********************************************************************************

!! self.initialize_options()

Error compiling Cython file:

... cdef output op cdef lensing le cdef distortions sd cdef file_content fc

cpdef int computed # Flag to see if classy has already computed with the given pars
     ^

classy.pyx:103:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

Error compiling Cython file:

... cdef lensing le cdef distortions sd cdef file_content fc

cpdef int computed # Flag to see if classy has already computed with the given pars
cpdef int allocated # Flag to see if classy structs are allocated already
     ^

classy.pyx:104:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

Error compiling Cython file:

... cdef distortions sd cdef file_content fc

cpdef int computed # Flag to see if classy has already computed with the given pars
cpdef int allocated # Flag to see if classy structs are allocated already
cpdef object _pars # Dictionary of the parameters
     ^

classy.pyx:105:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

Error compiling Cython file:

... cdef file_content fc

cpdef int computed # Flag to see if classy has already computed with the given pars
cpdef int allocated # Flag to see if classy structs are allocated already
cpdef object _pars # Dictionary of the parameters
cpdef object ncp   # Keeps track of the structures initialized, in view of cleaning.
     ^

classy.pyx:106:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

Error compiling Cython file:

... _pars = { "output":"tCl mPk",} self.set(**_pars)

def __cinit__(self, default=False):
    cpdef char* dumc
         ^

classy.pyx:131:14: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. warning: classy.pyx:361:76: local variable 'errmsg' referenced before assignment warning: classy.pyx:362:39: local variable 'errmsg' referenced before assignment cc1: fatal error: /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/python/../python/classy.c: No such file or directory compilation terminated. error: command '/usr/bin/gcc' failed with exit code 1 /usr/local/bin/miniconda3/envs/cobaya-new2/lib/python3.8/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !!

    ********************************************************************************
    Please avoid running ``setup.py`` directly.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
    ********************************************************************************

!! self.initialize_options() /usr/local/bin/miniconda3/envs/cobaya-new2/lib/python3.8/site-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated. !!

    ********************************************************************************
    Please avoid running ``setup.py`` and ``easy_install``.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://github.com/pypa/setuptools/issues/917 for details.
    ********************************************************************************

!! self.initialize_options()

Error compiling Cython file:

... cdef output op cdef lensing le cdef distortions sd cdef file_content fc

cpdef int computed # Flag to see if classy has already computed with the given pars
     ^

classy.pyx:103:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

Error compiling Cython file:

... cdef lensing le cdef distortions sd cdef file_content fc

cpdef int computed # Flag to see if classy has already computed with the given pars
cpdef int allocated # Flag to see if classy structs are allocated already
     ^

classy.pyx:104:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

Error compiling Cython file:

... cdef distortions sd cdef file_content fc

cpdef int computed # Flag to see if classy has already computed with the given pars
cpdef int allocated # Flag to see if classy structs are allocated already
cpdef object _pars # Dictionary of the parameters
     ^

classy.pyx:105:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

Error compiling Cython file:

... cdef file_content fc

cpdef int computed # Flag to see if classy has already computed with the given pars
cpdef int allocated # Flag to see if classy structs are allocated already
cpdef object _pars # Dictionary of the parameters
cpdef object ncp   # Keeps track of the structures initialized, in view of cleaning.
     ^

classy.pyx:106:10: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

Error compiling Cython file:

... _pars = { "output":"tCl mPk",} self.set(**_pars)

def __cinit__(self, default=False):
    cpdef char* dumc
         ^

classy.pyx:131:14: Variables cannot be declared with 'cpdef'. Use 'cdef' instead. warning: classy.pyx:361:76: local variable 'errmsg' referenced before assignment warning: classy.pyx:362:39: local variable 'errmsg' referenced before assignment cc1: fatal error: /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/cosmo_packages-alexey/code/classy/python/../python/classy.c: No such file or directory compilation terminated. error: command '/usr/bin/gcc' failed with exit code 1 make: *** [Makefile:195: classy] Error 1 Singularity>

Any help with it, please?

kabeleh commented 10 months ago

I think there is an easy fix for that:

Go into classy.pyx and replace every instance of cpdef with cdef. Then make clean; make again. :)

akonvisher commented 10 months ago

Thank you very much. It works now!

JesusTorrado commented 10 months ago

This is actually a duplicate of #531.